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Bioinformatics, 2nd ed.: Errata
Here we'll list any errata, bugs and corrections for the book. For the latest version of
the R scripts referenced in the text, please click here.
Chapter 2
| Page 46 |
right column,
line 35 |
"data/" should read "data>". |
Chapter 3
Page 75
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box reading "is alignment of high quality?" should read "Is alignment of high quality?3" |
| Page 98 |
Figure 3.14 legend,
line 11 |
"–2 –5= –7" should read "–3 –5= –8". |
Chapter 4
Page 126
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right column,
line 17 |
"positives" should be "negatives". |
Page 138
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Equation 22 |
"exp[–exp[–Kmn" should be "exp[–Kmn". |
Page 146
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line 5 |
"format, and then a request for three alignments." should be "format." |
Chapter 5
| Page 182 |
Figure 5.8 |
"Score for matching these two column in an msa" should read "Score for matching these two columns in an msa" |
| Page 200 |
line 20 |
"Table 5.1" should read "Table 5.2". |
| Page 202 |
|
the Example should read as
 |
Chapter 8
| Page 332 |
Figure 8.2 legend,
line 11 |
"in E" should read "in D and E" and "on each side." should read "on each side (not shown)." |
| Page 338 |
Table 8.2, title |
"378C" should read "37°C"; and table footnote, line 2, "39" should read "3'". |
| Page 339 |
Figure 8.6A |
The entry in column C, final row, should be blank. |
| Page 346 |
Figure 8.10B |
should read as
 |
| Page 347 |
Figure 8.11,
I. Seq 4. |
the green "T" should be a green "U". |
| Page 348 |
box, 2., line 1 |
"of programs" should be "of the programs". |
Chapter 9
| Page 366 |
left column, line 30 |
"downtream" should be "downstream". |
| Page 367 |
left column, line 1 |
"exons" should be "introns". |
| Page 370 |
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Table 9.2 should read as
 |
| Page 371 |
Table 9.3,
first column,
line 2 |
"UUC-Leu" should read "UUC-Phe"; and table footnote, line 1, "100,000" should read "1000". |
| Page 376 |
|
Figure 9.6 should read as
 |
Chapter 10
| Page 472 |
right column,
lines 28, 30, 40, and 43 |
"STRHMM" should read "HMMSTR". |
| Page 473 |
left column,
lines 7, 23, 27, 29, and 33 |
"STRHMM" should read "HMMSTR". |
Chapter 11
| Page 498 |
left column, line 17 |
"prokarytoic" should be "prokaryotic". |
| Page 515 |
Figure 11.6C, (ii) |
both circles labeled 3, which are now black on top and green on bottom, should be black on top and white on bottom. |
Chapter 13
| Page 632 |
Figure 13.9 legend |
The description of (D) should read "M/A
plot of a different data set with local background subtraction,
employing the minimum estimate of background for weakly expressed genes
that is described in the text. However, there were few negative values." |
| Page 635 |
Figure 13.10 legend,
line 21 |
"are subjected an analysis" should read "are subjected to an analysis"; and lines 27 and 35, "type k" should read "type l". |
| Page 636 |
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Table 13.5 should read as
 |
| Page 641 |
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Table 13.8 should read as
 |
| Page 644 |
Figure 13.15 |
"photosyn" should be deleted four times; and Figure
13.15 legend, line 5, "(Root Morphs, Shoot Morphs, and Photosynthetic
genes)" should read "(Root Morphs [red], Shoot Morphs [green], and Photosynthetic genes [blue])". |
| Page 645 |
left column,
lines 30-32 |
"Using these factor combinations to assist in
cluster assignments, the correlation coefficient between genes in
different clusters is 0. In FA, each factor refers" should read "In FA,
each factor refers". |
| Page 660 |
line 50 |
"Liao T.C." should read "Laio J.C.". |
Index
| Page 677 |
right column,
line 10 |
"prediction, 475" should read "prediction, 472–473, 475". |
| Page 690 |
right column,
line 40 |
"STRHMM, three-dimensional structure prediction, 472–473" should be deleted. |
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